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Suhas Sreehari, Singanallur V. Venkatakrishnan, Brendt Wohlberg, Gregery T. Buzzard, Lawrence F. Drummy, Jeffrey P. Simmons and Charles A. Bouman, "Plug-and-Play Priors for Bright Field Electron Tomography and Sparse Interpolation", IEEE Transactions on Computational Imaging, vol. 2, no. 4, doi:10.1109/TCI.2016.2599778, pp. 408--423, Dec 2016

Abstract

Many material and biological samples in scientific imaging are characterized by non-local repeating structures. These are studied using scanning electron microscopy and electron tomography. Sparse sampling of individual pixels in a 2D image acquisition geometry, or sparse sampling of projection images with large tilt increments in a tomography experiment, can enable high speed data acquisition and minimize sample damage caused by the electron beam.

In this paper, we present an algorithm for electron tomographic reconstruction and sparse image interpolation that exploits the non-local redundancy in images. We adapt a framework, termed plug-and-play priors, to solve these imaging problems in a regularized inversion setting. The power of the plug-and-play approach is that it allows a wide array of modern denoising algorithms to be used as a ``prior model'' for tomography and image interpolation. We also present sufficient mathematical conditions that ensure convergence of the plug-and-play approach, and we use these insights to design a new non-local means denoising algorithm. Finally, we demonstrate that the algorithm produces higher quality reconstructions on both simulated and real electron microscope data, along with improved convergence properties compared to other methods.

BibTeX Entry

@article{sreehari-2016-plug,
author = {Suhas Sreehari and Singanallur V. Venkatakrishnan and Brendt Wohlberg and Gregery T. Buzzard and Lawrence F. Drummy and Jeffrey P. Simmons and Charles A. Bouman},
title = {Plug-and-Play Priors for Bright Field Electron Tomography and Sparse Interpolation},
year = {2016},
month = Dec,
urlpdf = {http://math.lanl.gov/~brendt/Publications/Docs/sreehari-2016-plug.pdf},
journal = {IEEE Transactions on Computational Imaging},
volume = {2},
number = {4},
doi = {10.1109/TCI.2016.2599778},
pages = {408--423}
}